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UPC CFI 535/2025

Jun 19, 2025·EP2401365: REENGINEERING MRNA PRIMARY STRUCTURE FOR ENHANCED PROTEIN PRODUCTION

Parent infringement case:UPC CFI 846/2024

Case details
Status
Case Closed
Action
Counterclaim for revocation
Category
Counter Claim for Revocation
Parties
Respondents
Reps: Christine Kanz (Hoyng Rokh Monegier); Tobias J. Hessel (Clifford Chance Partnerschaft mbB)
Division
Munich LD
Technology
Biotech · mRNA · Biotechnology
Language
English
First decided
Jul 7, 2026
Claims
At issue1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
Revoked1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
Not infringed1
Notes: Claim 1 as granted found not novel over D1 (WO 91/01374) and D2 (Matsuda et al. 2006). Subclaims 2-9 not separately examined (closed claim set, fell with claim 1). Claims 10-11 addressed in AR4 context and found to lack inventive step as mere aggregation with claim 1 features. All 25 auxiliary requests dismissed: AR1 lacks inventive step over D1+D3; AR2 has added matter; AR3 lacks novelty/inventive step; AR4 lacks inventive step (aggregation); AR5 lacks novelty; AR6-25 dismissed for same reasons as ARs 1-5 mutatis mutandis. Infringement of claim 1 also separately not established on the facts.
Decisions
  • 2026-07-07
    RevokedRevocation meritsCounterclaim for revocation

    The Local Division Munich revoked European patent EP 2 401 365 in its entirety with effect to Germany, France and Sweden, finding claim 1 as granted lacks novelty over prior art D1 (WO 91/01374) and D2 (Matsuda et al. 2006), and all 25 auxiliary requests invalid. The infringement action brought by Promosome LLC against BioNTech/Pfizer was dismissed both because the patent is invalid and because the claimant failed to sufficiently substantiate that the attacked Comirnaty embodiments practised the claimed method of mutating actual secondary initiation codons.

    Legal issues:Standing to sue — whether Promosome LLC holds an exclusive licence under Art. 47(2) UPCA sufficient to bring infringement proceedingsTemporal jurisdiction — whether the UPC has competence over acts of infringement committed before 1 June 2023 (Art. 28 VCLT / Art. 32 UPCA)Claim construction — whether 'secondary initiation codon' in claim 1 requires an actual (functional) codon at which protein synthesis initiates, or merely a putative/potential codonLack of novelty of claim 1 over D2 (Matsuda et al. 2006, RNA) and D1 (WO 91/01374) — enabling disclosure of prior art for noveltyInfringement — whether Comirnaty mRNA vaccines practise the claimed method of mutating actual secondary initiation codons versus codon optimisationValidity of 25 auxiliary requests — lack of novelty (AR1, AR3, AR5), added matter (AR2), lack of inventive step (AR1, AR3, AR4), partial-problem approach for AR4 combining secondary-initiation-codon mutation and miRNA-binding-site mutationAdmissibility of late-filed evidence (exhibits VB37, VB38) and Rule 36 RoP further written pleadings
Documents
Document titleDatePublic
Decision2026-07-07Public
action.phaseChange.caseClose2026-07-07Not public
action.issueDecision.decision2026-07-07Not public
Decision2026-07-07Not public
Decision2026-07-07Not public
Hearing recording reference document2026-05-13Not public
action.communication.general2026-04-22Not public
Order2026-04-08Public
action.phaseChange.oralPhaseOpen2026-04-07Not public
action.phaseChange.interimPhaseClose2026-04-07Not public
action.summons.oralHearing2026-04-07Not public
Summons2026-04-07Not public
Order2026-03-13Public
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action.phaseChange.interimPhaseOpen2026-03-06Not public
action.phaseChange.writtenPhaseClose2026-03-06Not public
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Statement of rejoinder2026-03-05Not public
Exhibit Defendant2026-03-05Not public
Order2026-02-06Public
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Counterclaim rejoinder2026-02-05Not public
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action.communication.general2026-01-23Not public
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Acknowledgement of access to case2025-07-10Not public
Notification Of Service2025-07-10Not public
Document from EPO2025-07-09Not public
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EPO_Communication_check_Outcome2025-07-08Not public
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communicationCheck2025-07-03Not public
Document from EPO2025-07-02Not public
Panel-Appointment2025-07-01Not public
EPO-Request-for-case-pending2025-07-01Not public
Acknowledgement-of-lodging2025-07-01Not public
Formal-checks_Notification-of-positive-outcome2025-07-01Not public
Receipt2025-06-27Not public
Receipt2025-06-27Not public
250618_R.262A_Defendants_1_to_52025-06-19Not public
250618_R.262.2_Defendants_1_to_52025-06-19Not public
HRM_42_Rishik_20252025-06-19Not public
HRM_12_02_Scanning Model_Alberts_2022_7th ed2025-06-19Not public
HRM_35_Comirnaty mRNA encoding SARS-CoV-2 spike glycoprotein2025-06-19Not public
HRM_21_Alignment and Analysis_Codons_ WO966_SEQ ID NO 3_v_SEQ ID NO 95_96_972025-06-19Not public
D09_Forman_20082025-06-19Not public
HRM_9_07_Annex 7_Gustafsson 2004_Codon Bias and Heterologous Protein Expression2025-06-19Not public
HRM_12_11_Shang_20232025-06-19Not public
HRM_39_Alignment Codons_WT v Comirnaty_miR15a Binding Site2025-06-19Not public
HRM_28_Sequence_Alignment_WT_v_CO_miRNA_Tab2_Babcock2025-06-19Not public
D02_Matsuda_20062025-06-19Not public
HRM_11_Proof_of_Payment_CfR_DE2025-06-19Not public
D11_Li_20222025-06-19Not public
HRM_31_Letter dated 30 September 20132025-06-19Not public
HRM_24_Alignment_SARS-CoV-1 N Protein WT_v_JCat2025-06-19Not public
HRM_12_12_Rishik_20252025-06-19Not public
HRM_12_07_judgment_FPC_231219_S09794-22-01_EP122_DE2025-06-19Not public
HRM_9_11_Annex 11_Vaddadi 2023_Cellular microRNAs target SARS-CoV-2 spike protein and restrict viral re2025-06-19Not public
HRM_12_04_Chappell_20062025-06-19Not public
D07_Kopecky-Bromberg_20072025-06-19Not public
HRM_22_Babcock_Amino Acid and Nucleotide sequence of truncated SARS-CoV S1190 Protein2025-06-19Not public
HRM_11_Proof_of_Payment_CfR_DE2025-06-19Not public
HRM_12_08_Gustafsson_20042025-06-19Not public
HRM_9_10_Annex 10_Munoz 2023_The long and short of EJC-independent nonsense-mediated RNA decay2025-06-19Not public
D04_Babcock_20042025-06-19Not public
HRM_27_Sequence_Highlighted_WT_miRNA_Tab2_Babcock2025-06-19Not public
HRM_9_06_Annex 6_Partial Alignment of Dinman wild-type reference sequences2025-06-19Not public
HRM_9_09_Annex 9_Amino acid sequence alignment of Test constructs2025-06-19Not public
HRM_12_01_Kozak_1981_Kozak_19892025-06-19Not public
HRM_9_04_Annex_4_Li 20222025-06-19Not public
HRM_9_03_Annex 3_Matsuda 2006 _Close spacing of AUG initiation codons confers dicistronic character on a eukaryotic mRNA2025-06-19Not public
HRM_9_08_Annex 8_Comirnaty-EPAR-public-assessment-report_ENG2025-06-19Not public
HRM_12_10_Bartel_20182025-06-19Not public
HRM_20_Gustafsson_20042025-06-19Not public
HRM_12_Technical_background2025-06-19Not public
HRM_37_Amino Acid Alignment Test Constructs 1-52025-06-19Not public
HRM_12_09_Munoz_20232025-06-19Not public
D10_Tay_20082025-06-19Not public
HRM_26_WO966_Sequences re SEQ ID NO 3_v_95_96_97_Alignment and Analysis re Putative miRNA Binding Sites2025-06-19Not public
HRM_33_Orom_20082025-06-19Not public
HRM_9_05_Annex 5_Analysis of Mutations to Secondary Initiation Codons2025-06-19Not public
D03.2_WO 2006011966 A1_20062025-06-19Not public
HRM_9_02_Annex 2_Wan 2014_TISdb a database for alternative translation initiation in mammalian cells2025-06-19Not public
HRM_10_Chappell_20062025-06-19Not public
HRM_32_Doran_20072025-06-19Not public
HRM_29_Supplementary European search report2025-06-19Not public
D03.1_WO 2006011966 A1_2006_2025-06-19Not public
HRM_17_Comparison_EP365_US1792025-06-19Not public
D05_Das_20062025-06-19Not public
HRM_19_judgment_FPC_231219_S09794-22-01_EP122_DE2025-06-19Not public
HRM_19_judgment_FPC_231219_S09794-22-01_EP122_DE2025-06-19Not public
HRM_41_Shang_20232025-06-19Not public
HRM_36_Comirnaty_EPAR_PAR2025-06-19Not public
HRM_13_Kozak_1981_Kozak_19892025-06-19Not public
HRM_34_Delaware_Secretary_of_State_Excerpt2025-06-19Not public
HRM_23_Babcock_Nucleotide sequence alignment _SARS-CoV S1190_WT v Optimized_Out-of-Frame2025-06-19Not public
HRM_12_07_judgment_FPC_231219_S09794-22-01_EP122_DE2025-06-19Not public
HRM_38_Annex 5_Analysis of Mutations to Secondary Initiation Codons2025-06-19Not public
HRM_12_06_Excerpt_Sambrook_Molecular_Cloning2025-06-19Not public
HRM_40_Bartel_20182025-06-19Not public
HRM_16_Excerpt_A Dictionary of Biology_20042025-06-19Not public
HRM_12_03_Brant_20212025-06-19Not public
HRM_15_Eulalio_20082025-06-19Not public
HRM_14_Feature Analysis_Claim 1_ Claim 102025-06-19Not public
HRM_12_05_Chappell_2006_22025-06-19Not public
HRM_25_Alignment and Analysis re Codons_SARS-CoV-1 N Protein WT_v_JCat2025-06-19Not public
D06_Grote_20052025-06-19Not public
250618_SoD_CfR_Defendants_1_to_5_final_signed2025-06-19Not public
250618_SoD_CfR_Defendants_1_to_5_final_signed2025-06-19Not public
D01_WO 9101374 A1_19912025-06-19Not public
HRM_18_Excerpt_Sambrook_Molecular_Cloning2025-06-19Not public
HRM_9_01_Annex 1_CV_Hellen2025-06-19Not public
HRM_09_Expert_Report_Prof_Hellen signed2025-06-19Not public
HRM_30_European search Report2025-06-19Not public
D08_Peabody_19892025-06-19Not public
Accepted arguments
What the court agreed with — by party.
  • Promosome LLC is an exclusive licensee with standing to sue under Art. 47(2) UPCA: the licence agreements (VB4a/VB4b) transfer all rights of commercial exploitation while barring the patent proprietor from granting rights to any other party in the same field, which is sufficient for exclusivity even if geographically or otherwise limited

    ClaimantLegal basis: Art. 47(2) UPCA
  • The UPC has competence to hear infringement acts occurring before 1 June 2023, including Comirnaty Original/Omicron BA.1 (attacked embodiment 2b); the UPCA imposes no temporal limitation on the Court's exclusive competence under Art. 32(1)(a) UPCA

    ClaimantLegal basis: Art. 32 UPCA; Art. 28 VCLT; UPC_CoA_30/2024 (Fives/Reel); UPC_CoA_156/2025 (XSYS/ESKO)
  • Claim 1 requires mutation of one or more actual secondary initiation codons (at which protein synthesis actually initiates) and a causal link between mutation and the claimed functional effects (feature group 1.3); putative/potential codons are insufficient

    RespondentLegal basis: Art. 69 EPC; Protocol on Interpretation of Art. 69 EPC
  • D2 (Matsuda et al. 2006) discloses all features of claim 1: the bicistronic TYMV system provides a coding sequence for p69 (protein of interest) with primary initiation codon AUG69, a downstream secondary initiation codon AUG206 within the coding sequence, mutation of AUG206 to ACG increasing p69 expression 2.5-fold without altering amino acid sequence; D2 thus anticipates claim 1

    RespondentLegal basis: Art. 54 EPC
  • D1 (WO 91/01374) also discloses all features of claim 1 in an enabling manner: it teaches preventing undesired internal translation initiation by altering internal initiator codons without changing amino acid sequence, thereby maximising yield of useful polypeptides

    RespondentLegal basis: Art. 54 EPC
  • Claimant failed to sufficiently substantiate infringement: the evidence (VB6a, VB34) cannot establish that actual secondary initiation codons were mutated and caused the claimed effects, because (i) the difference between Test B (vaccine) and Test C (deoptimised tozinameran) also reflects a significant difference in CAI/codon optimisation, and (ii) functional internal start sites are admittedly rare

    RespondentLegal basis: Art. 25 UPCA; burden of proof on claimant
  • AR4 combines two independent methods (secondary-initiation-codon mutation + miRNA-binding-site mutation) that are a mere aggregation/juxtaposition without functional interdependency; applying the partial-problem approach, each method is independently obvious from prior art (D9/D10 for miRNA features, D1/D2 for secondary initiation codon features), so AR4 lacks inventive step

    RespondentLegal basis: Art. 56 EPC; UPC_CoA_71/2025 (VMR Products/NJOY)
  • AR2 introduces added matter: requiring mutation of at least one of each of seven specific non-canonical codons (ACG, GUG, UUG, CUG, AUA, AUC, AUU) as a combined requirement is not directly and unambiguously disclosed in the application as filed

    RespondentLegal basis: Art. 123(2) EPC; Art. 138(1)(c) EPC
Rejected arguments
What the court did not agree with — and why.
  • D1 (WO 91/01374) does not provide an enabling disclosure because its preferred embodiment (59 kDa IL-2-toxin contaminant) is merely asserted but not experimentally demonstrated, and the underlying scientific explanation is not credible

    ClaimantLegal basis: Art. 54 EPC (enabling prior art disclosure requirement)
  • D2 does not disclose a secondary initiation codon within the meaning of claim 1 because AUG206 is the primary initiation codon of a second protein in a bicistronic construct, not a secondary initiation codon of the protein of interest

    ClaimantLegal basis: Claim construction — Art. 69 EPC
  • Feature group 1.3 (mutation results in decrease in initiation / reduction in ribosomal diversion / increased expression efficiency) is merely a technical limitation / stated purpose that does not add a limiting method step, so that mutating any putative secondary initiation codon suffices for infringement

    ClaimantLegal basis: Claim construction — Art. 69 EPC
  • The experimental evidence (VB6a, VB34) showing increased spike protein expression in vaccine vs. re-introduced-secondary-codons construct (Test B vs. Test C) is sufficient to demonstrate that actual secondary initiation codons were mutated resulting in the claimed effects

    ClaimantLegal basis: Burden of proof / infringement substantiation
  • The Defendants' preliminary objection that the UPC lacks jurisdiction over acts committed only before 1 June 2023 (Comirnaty Original/Omicron BA.1) should be upheld under Art. 28 VCLT

    RespondentLegal basis: Art. 28 VCLT; Art. 32 UPCA